TreatCFM000381's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 9-cis-epoxycarotenoid dioxygenase activity | 0.014136365 | GO:0045549 |
| lipid transporter activity | 0.014136365 | GO:0005319 |
| protein N-glycosylation (eukaryotic, high mannose) | 0.015515614 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.02827273 | cazy family |
| lipid transport | 0.032454045 | GO:0006869 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000276 | - | - |
| CRO_T007885 | - | - |
| CRO_T008562 | AT1G42470 (0) | Patched family protein |
| CRO_T009181 | - | - |
| CRO_T010100 | - | - |
| CRO_T011722 | AT1G78390 (0) | ATNCED9|NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9 |
| CRO_T013034 | - | - |
| CRO_T013128 | - | - |
| CRO_T014373 | - | - |
| CRO_T015186 | AT5G38460 (6.00E-62) | ALG6, ALG8 glycosyltransferase family |
| CRO_T016246 | - | - |
| CRO_T017232 | - | - |
| CRO_T022421 | - | - |
| CRO_T022983 | - | - |
| CRO_T026184 | - | - |
| CRO_T026445 | - | - |
| CRO_T026995 | - | - |
| CRO_T029668 | - | - |
| CRO_T030064 | - | - |
| CRO_T030386 | - | - |
| CRO_T032456 | - | - |
| CRO_T032915 | - | - |
| CRO_T033261 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000051 | phosphatidylethanolamine biosynthesis II ethanolamine-phosphate cytidylyltransferase activity lipid transporter activity ErbB signaling pathway Lysosome Glycerophospholipid metabolism adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | details |
| TreatCFM000084 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) C-19 gibberellin 2-beta-dioxygenase activity gibberellin catabolic process aspartyl esterase activity pectinesterase activity pectinesterase inhibitor activity transferase activity, transferring hexosyl groups Diterpenoid biosynthesis N-Glycan biosynthesis cell wall modification pectin catabolic process response to light stimulus negative regulation of catalytic activity Pentose and glucuronate interconversions | details |
| TreatCFM000095 | defense response, incompatible interaction activation of MAPK activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K lipid transport MAP kinase kinase activity lipid transporter activity Base excision repair Lysosome MAPK cascade MAP kinase activity | details |
| TreatCFM000115 | phosphatidylethanolamine biosynthesis II | details |
| TreatCFM000139 | formation of glycosidic bonds, GlycosylTransferases: GTnc regulation of embryonic development protein N-glycosylation (eukaryotic, high mannose) glycyl-tRNA aminoacylation glycine-tRNA ligase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis transferase activity, transferring hexosyl groups small GTPase mediated signal transduction embryo development ending in seed dormancy transferase activity, transferring acyl groups | details |
| TreatCFM000214 | tubulin binding formation of glycosidic bonds, GlycosylTransferases: GTnc lipid IVA biosynthesis Lipopolysaccharide biosynthesis organophosphate metabolic process carbohydrate derivative metabolic process protein N-glycosylation (eukaryotic, high mannose) tubulin complex assembly cullin deneddylation | details |
| TreatCFM000257 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds protein N-glycosylation (eukaryotic, high mannose) gene silencing by RNA nitrogen compound metabolic process N-Glycan biosynthesis transferase activity, transferring hexosyl groups transferase activity, transferring acyl groups | details |
| TreatCFM000272 | xyloglucan biosynthetic process endomembrane system organization cellular response to gravity fucose biosynthetic process | details |
| TreatCFM000278 | cellular component organization Homologous recombination single-organism cellular process lipid transporter activity MAP kinase kinase activity activation of MAPK activity defense response, incompatible interaction Protein_kinases_phosphatases, PPC:4.1.4: MAP2K cellular response to DNA damage stimulus MAP kinase activity lipid transport Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK cascade DNA metabolic process MAPK signaling pathway - plant DNA repair | details |
| TreatCFM000280 | defense response, incompatible interaction activation of MAPK activity lipid transporter activity MAP kinase kinase activity MAP kinase activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K lipid transport MAPK cascade Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK signaling pathway - plant | details |
| TreatCFM000317 | cytoplasmic, membrane-bounded vesicle | details |
| TreatCFM000319 | endomembrane system organization fucose biosynthetic process defense response, incompatible interaction activation of MAPK activity xyloglucan biosynthetic process lipid transporter activity MAP kinase kinase activity MAP kinase activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K lipid transport salicylic acid mediated signaling pathway aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis unidimensional cell growth MAPK cascade adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | details |
| TreatCFM000351 | lipid transporter activity lipid transport Lysosome | details |
| TreatCFM000380 | sulfotransferase activity lipid transporter activity lipid transport Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | details |
| TreatCFM000394 | protein N-glycosylation (eukaryotic, high mannose) adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Toll and Imd signaling pathway root epidermal cell differentiation regulation of salicylic acid metabolic process cell wall macromolecule catabolic process glutaminyl-tRNAGln biosynthesis via transamidation postreplication repair protein K63-linked ubiquitination glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity DNA topoisomerase activity mitochondrial translation response to nitrate Ubiquitin_Proteasome_system, E2: UBC chitin catabolic process multidimensional cell growth glutamyl-tRNA(Gln) amidotransferase complex Aminoacyl-tRNA biosynthesis Homologous recombination N-Glycan biosynthesis response to heat chitinase activity response to water deprivation response to cytokinin cellulose biosynthetic process response to salt stress ubiquitin protein ligase binding transferase activity, transferring hexosyl groups | details |
| TreatCFM000400 | lipid transporter activity lipid transport Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: B3 | details |
| TreatCFM000425 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) N-Glycan biosynthesis small GTPase mediated signal transduction transferase activity, transferring hexosyl groups GTP binding | details |
| TreatCFM000447 | activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity lipid transporter activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K lipid transport MAP kinase activity MAPK cascade Lysosome Sesquiterpenoid and triterpenoid biosynthesis isomerase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK signaling pathway - plant | details |
| TreatCFM000474 | defense response, incompatible interaction activation of MAPK activity lipid transporter activity structural constituent of cell wall MAP kinase kinase activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K MAP kinase activity lipid transport MAPK cascade Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK signaling pathway - plant | details |
| TreatCFM000483 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) N-Glycan biosynthesis transferase activity, transferring hexosyl groups | details |
| TreatCFM000541 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) ribosomal small subunit assembly mRNA binding transferase activity, transferring hexosyl groups N-Glycan biosynthesis rRNA binding | details |
| TreatCFM000550 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) transferase activity, transferring hexosyl groups N-Glycan biosynthesis | details |
| TreatCFM000551 | phospholipase D activity N-acylphosphatidylethanolamine-specific phospholipase D activity lipid transporter activity phosphatidylcholine metabolic process lipid catabolic process lipid transport choline biosynthesis III phosphatidate metabolism, as a signaling molecule phospholipases Glycerophospholipid metabolism Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | details |
| TreatCFM000552 | Cytochrome_P450, Cytochrome P450: CYP85A ribonuclease H2 complex lipid transporter activity N-acylphosphatidylethanolamine-specific phospholipase D activity RNA-DNA hybrid ribonuclease activity myo-inositol:proton symporter activity phospholipase D activity choline biosynthesis III phosphatidate metabolism, as a signaling molecule phospholipases RNA catabolic process phosphatidylcholine metabolic process myo-inositol transport adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Brassinosteroid biosynthesis DNA replication Glycerophospholipid metabolism Lysosome sterol metabolic process glucose import glucose transmembrane transport brassinosteroid homeostasis brassinosteroid biosynthetic process lipid catabolic process lipid transport proton transport | details |
| TreatCFM000562 | phosphatidylethanolamine biosynthesis II ethanolamine-phosphate cytidylyltransferase activity lipid transporter activity Glycerophospholipid metabolism Lysosome lipid transport integral component of mitochondrial outer membrane adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII biosynthetic process serine-type endopeptidase activity | details |
| TreatCFM000618 | dUDP biosynthetic process dTDP biosynthetic process dTTP biosynthetic process thymidylate kinase activity ethanolamine-phosphate cytidylyltransferase activity | details |
| TreatCFM000646 | details | |
| TreatCFM000647 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K MAP kinase kinase activity lipid transporter activity activation of MAPK activity defense response, incompatible interaction MAP kinase activity embryo sac development lipid transport mRNA processing Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK cascade rRNA processing MAPK signaling pathway - plant RNA processing | details |
| TreatCFM000669 | ErbB signaling pathway Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | details |
| TreatCFM000733 | Transcription_related, Transcription factor: B3 | details |
| TreatCFM000773 | defense response, incompatible interaction activation of MAPK activity lipid transporter activity MAP kinase kinase activity MAP kinase activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K lipid transport MAPK cascade Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK signaling pathway - plant | details |
| TreatCFM000875 | fucose biosynthetic process endomembrane system organization xyloglucan biosynthetic process Lysosome lipid transporter activity lipid transport salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII integral component of Golgi membrane | details |
| TreatCFM000886 | activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity lipid transporter activity MAP kinase activity lipid transport Protein_kinases_phosphatases, PPC:4.1.4: MAP2K MAPK cascade Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: B3 MAPK signaling pathway - plant | details |
| TreatCFM000918 | sulfotransferase activity | details |
| TreatCFM000940 | details | |
| TreatCFM000943 | lipid transporter activity lipid transport Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | details |
| TreatCFM000958 | lipid transporter activity lipid transport Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | details |
| TreatCFM000962 | lipid transporter activity lipid transport Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: B3 | details |
| TreatCFM000969 | cytoplasmic, membrane-bounded vesicle | details |
| TreatCFM000976 | defense response, incompatible interaction activation of MAPK activity lipid transporter activity MAP kinase kinase activity MAP kinase activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K lipid transport MAPK cascade Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK signaling pathway - plant | details |
| TreatCFM001146 | details | |
| TreatCFM001224 | lipid transporter activity Lysosome lipid transport adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII peptidase activity aspartic-type endopeptidase activity lipid metabolic process | details |
| TreatCFM001491 | lipid transporter activity plasmodesma Hedgehog signaling pathway lipid transport Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Ubiquitin_Proteasome_system, E3 adaptor: BTB transporter activity | details |
| TreatCFM001493 | activation of MAPK activity defense response, incompatible interaction fucose biosynthetic process xyloglucan biosynthetic process endomembrane system organization Ribosome MAP kinase kinase activity lipid transporter activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K structural constituent of ribosome 5S rRNA binding MAP kinase activity translation lipid transport salicylic acid mediated signaling pathway unidimensional cell growth adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII integral component of Golgi membrane MAPK cascade aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) detoxification of reactive carbonyls in chloroplasts Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis NAD/NADH phosphorylation and dephosphorylation pinobanksin biosynthesis xyloglucan biosynthesis Lysosome single-organism metabolic process | details |
| TreatCFM001562 | lipid transporter activity Ether lipid metabolism lipid transport Transcriptional misregulation in cancers Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | details |
| TreatCFM001790 | lipid transport Lysosome lipid transporter activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: NAC | details |
Expression profiles
 Show details about module gene expression profiling |