TreatCFM001779's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| developmental process involved in reproduction | 0.009770284 | GO:0003006 |
| detection of nutrient | 0.009770284 | GO:0009594 |
| organ senescence | 0.009770284 | GO:0010260 |
| vegetative phase change | 0.009770284 | GO:0010050 |
| regulation of cellular metabolic process | 0.009770284 | GO:0031323 |
| L-malate dehydrogenase activity | 0.01213642 | GO:0030060 |
| protein tyrosine kinase activity | 0.01213642 | GO:0004713 |
| glyoxylate cycle | 0.015567144 | plantCyc |
| TCA cycle II (plants and fungi) | 0.015567144 | plantCyc |
| sugar mediated signaling pathway | 0.016275387 | GO:0010182 |
| Apelin signaling pathway | 0.016276425 | KEGG pathway |
| primary root development | 0.018129805 | GO:0080022 |
| gluconeogenesis I | 0.021562991 | plantCyc |
| malate metabolic process | 0.0219536 | GO:0006108 |
| tricarboxylic acid cycle | 0.03356283 | GO:0006099 |
| zinc ion binding | 0.037007645 | GO:0008270 |
| peptidyl-tyrosine phosphorylation | 0.041847452 | GO:0018108 |
| abscisic acid-activated signaling pathway | 0.044204208 | GO:0009738 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000860 | AT2G29760 (9.00E-116) | OTP81|ORGANELLE TRANSCRIPT PROCESSING 81 |
| CRO_T002055 | AT2G22780 (6.00E-29) | PMDH1|peroxisomal NAD-malate dehydrogenase 1 |
| CRO_T006022 | - | - |
| CRO_T008724 | AT2G26470 (9.00E-63) | unknown protein |
| CRO_T016956 | AT1G32230 (1.00E-17) | ATP8|P8 (INTERACTING PROTEIN); RCD1|RADICAL-INDUCED CELL DEATH1 |
| CRO_T020905 | AT4G08690 (9.00E-19) | Sec14p-like phosphatidylinositol transfer family protein |
| CRO_T021519 | AT3G01090 (4.00E-81) | AKIN10|SNF1 kinase homolog 10; SNRK1.1|SNF1-RELATED PROTEIN KINASE 1.1 |
| CRO_T030788 | AT1G17210 (0) | ATILP1|ARABIDOPSIS IAP-LIKE PROTEIN; ILP1|IAP-like protein 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000360 | radial pattern formation bundle sheath cell fate specification regulation of cellular metabolic process maintenance of protein location in nucleus asymmetric cell division gravitropism glyoxylate cycle TCA cycle II (plants and fungi) Transcription_related, Transcription factor: GRAS gluconeogenesis I malate metabolic process leaf development tricarboxylic acid cycle L-malate dehydrogenase activity | details |
| TreatCFM000579 | mannose-6-phosphate isomerase activity nucleotidase activity Transcription_related, Transcription regulator: TAZ zinc ion binding cellular potassium ion homeostasis GDP-mannose biosynthetic process D-mannose degradation GDP-mannose biosynthesis guanosine nucleotides degradation I guanosine nucleotides degradation II mannitol biosynthesis transcription cofactor activity voltage-gated potassium channel activity histone acetyltransferase activity L-ascorbate biosynthesis I (L-galactose pathway) mannitol degradation II pyrimidine salvage pathway adenosine nucleotides degradation I | details |
| TreatCFM001289 | histone methyltransferase activity (H3-K9 specific) methyl-CpNpN binding steroid dehydrogenase activity methyl-CpNpG binding alcohol dehydrogenase (NADP+) activity NADP+ binding double-stranded methylated DNA binding oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen methyl-CpG binding monooxygenase activity endopeptidase activity enzyme regulator activity Cytochrome_P450, Cytochrome P450: CYP714A response to toxic substance maintenance of DNA methylation histone H3-K9 methylation response to absence of light regulation of protein catabolic process response to red light intracellular transport response to far red light positive regulation of G2/M transition of mitotic cell cycle cullin deneddylation proteasome storage granule Sec61 translocon complex | details |
| TreatCFM001369 | regulation of cellular metabolic process cullin deneddylation positive regulation of G2/M transition of mitotic cell cycle carbohydrate metabolic process Transcription_related, Transcription factor: C3H glyoxylate cycle TCA cycle II (plants and fungi) malate metabolic process phosphotransferase activity, alcohol group as acceptor L-malate dehydrogenase activity Sec61 translocon complex gluconeogenesis I tricarboxylic acid cycle COP9 signalosome Protein export proteasome complex | details |
| TreatCFM001604 | steroid dehydrogenase activity NADP+ binding alcohol dehydrogenase (NADP+) activity detoxification of reactive carbonyls in chloroplasts virus induced gene silencing response to toxic substance response to absence of light response to far red light response to red light posttranscriptional gene silencing by RNA response to cold nuclear body protein homodimerization activity S-adenosylmethionine-dependent methyltransferase activity response to water deprivation response to salt stress | details |
| TreatCFM001720 | rescue of stalled ribosome mitochondrial translational termination translation release factor activity, codon nonspecific translation release factor activity, codon specific aminoacyl-tRNA hydrolase activity ribosome binding plastoglobule mitochondrial large ribosomal subunit | details |
| TreatCFM001791 | condensed chromosome outer kinetochore spindle microtubule chromosome segregation cell division vesicle fusion exocytosis SNARE complex SNARE binding SNAP receptor activity microtubule binding transporter activity | details |
| TreatCFM001969 | Autophagy - yeast condensed chromosome outer kinetochore chromosome segregation spindle microtubule phragmoplast cell division vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |