TreatCFM001659's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| condensed chromosome | 0.002481903 | GO:0000793 |
| chromosome condensation | 0.010533704 | GO:0030261 |
| Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase | 0.010620936 | kinase family |
| Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX | 0.010620936 | kinase family |
| Transcription_related, Transcription regulator: AUX/IAA | 0.015719383 | TF family |
| Cell cycle - yeast | 0.015911428 | KEGG pathway |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.018255972 | cazy family |
| DNA replication | 0.023807975 | KEGG pathway |
| DNA recombination | 0.032850768 | GO:0006310 |
| protein phosphorylation | 0.032850768 | GO:0006468 |
| mitotic nuclear division | 0.032850768 | GO:0007067 |
| DNA repair | 0.0445071 | GO:0006281 |
| drug transmembrane transport | 0.0445071 | GO:0006855 |
| regulation of cellular process | 0.0445071 | GO:0050794 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001708 | AT4G18750 (3.00E-107) | DOT4|DEFECTIVELY ORGANIZED TRIBUTARIES 4 |
| CRO_T006964 | AT3G02920 (2.00E-55) | ATRPA32B; RPA32B|Replication protein A, subunit RPA32 |
| CRO_T018132 | AT2G32590 (3.00E-176) | EMB2795|EMBRYO DEFECTIVE 2795 |
| CRO_T018166 | AT3G57120 (2.00E-103) | Protein kinase superfamily protein |
| CRO_T028622 | AT3G55950 (3.00E-64) | CCR3|CRINKLY4 related 3 |
| CRO_T030670 | AT5G65670 (5.00E-26) | IAA9|indole-3-acetic acid inducible 9 |
| CRO_T031316 | AT3G21690 (0) | MATE efflux family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001035 | Peroxisome thioredoxin pathway sesamin biosynthesis Cytochrome_P450, Cytochrome P450: CYP81D Protein_kinases_phosphatases, PPC:1.3.2: Leucine Rich Repeat Receptor VIII cytoskeletal part microtubule cytoskeleton steroid metabolic process | details |
| TreatCFM001103 | adenine and adenosine salvage II Transcription_related, Transcription factor: OFP phospholipase activity adenine phosphoribosyltransferase activity acylglycerol lipase activity adenine salvage microtubule cytoskeleton cytoskeletal part nucleoside metabolic process lipid catabolic process FMN binding cytoplasm antiporter activity drug transmembrane transporter activity regulation of cellular process drug transmembrane transport | details |
| TreatCFM001517 | Plant-pathogen interaction Cytochrome_P450, Cytochrome P450: CYP81K folate polyglutamylation II glutamate removal from folates UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) peptide-methionine (S)-S-oxide reductase activity gamma-glutamyl-peptidase activity Cytochrome_P450, Cytochrome P450: CYP81D UDP-glucose 4-epimerase activity D-galactose degradation III Cell cycle - yeast Folate biosynthesis tetrahydrofolylpolyglutamate metabolic process chromosome condensation condensed chromosome microtubule cytoskeleton cytoskeletal part UDP-sugars interconversion stachyose degradation Galactose metabolism ADP binding sesamin biosynthesis protein repair indole glucosinolate metabolic process defense response to other organism mitotic nuclear division galactose metabolic process glutamine metabolic process | details |
| TreatCFM001590 | long-chain fatty acid-CoA ligase activity condensed chromosome chromosome condensation long-chain fatty acid metabolic process mitotic nuclear division Cell cycle - yeast Fatty acid metabolism cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
| TreatCFM001642 | cyanide degradation cyanide detoxification I Transcription_related, Transcription factor: ARF L-cysteine biosynthesis I L-3-cyanoalanine synthase activity cyanide metabolic process actin filament binding cysteine synthase activity calcium-dependent phospholipid binding DNA binding DNA replication cysteine biosynthetic process from serine pollen tube growth pollen germination cellular amino acid biosynthetic process DNA recombination auxin-activated signaling pathway pollen development S-adenosylmethionine-dependent methyltransferase activity DNA repair | details |
| TreatCFM001658 | alpha-Linolenic acid metabolism dioxygenase activity peroxidase activity response to oxidative stress cellular oxidant detoxification nucleolar ribonuclease P complex fatty acid α-oxidation I heme binding ribonuclease P activity Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase gene silencing by RNA Transcription_related, Transcription regulator: AUX/IAA adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 RNA phosphodiester bond hydrolysis, endonucleolytic Plant hormone signal transduction regulation of cellular process | details |
| TreatCFM001986 | L-alanine biosynthesis III molybdenum cofactor biosynthesis tRNA wobble position uridine thiolation chromosome condensation protein targeting to chloroplast Cell cycle - yeast Fanconi anemia pathway sulfurtransferase activity hydrolase activity, acting on acid anhydrides condensed chromosome mitotic nuclear division zinc II ion transmembrane transport | details |
| TreatCFM002010 | Transcription_related, Transcription factor: ERF | details |
| TreatCFM002080 | chromosome condensation condensed chromosome mitotic nuclear division Cell cycle - yeast Fanconi anemia pathway Transcription_related, Transcription factor: HB cytoplasmic part | details |
| TreatCFM002081 | Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
Expression profiles
 Show details about module gene expression profiling |