TreatCFM001161's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: LIM | 0.005316398 | TF family |
| glycolysis I (from glucose 6-phosphate) | 0.009362512 | plantCyc |
| Transcription_related, Transcription factor: C2H2 | 0.020630054 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000271 | AT2G28200 (1.00E-12) | C2H2-type zinc finger family protein |
| CRO_T005133 | AT1G12850 (7.00E-110) | Phosphoglycerate mutase family protein |
| CRO_T011991 | AT1G10200 (2.00E-54) | WLIM1|WLIM1 |
| CRO_T012749 | AT3G59480 (0.000000001) | pfkB-like carbohydrate kinase family protein |
| CRO_T014814 | AT1G13790 (1.00E-102) | FDM4|factor of DNA methylation 4 |
| CRO_T014904 | AT4G26000 (4.00E-78) | PEP|PEPPER |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000050 | details | |
| TreatCFM000096 | Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase DNA ligation involved in DNA repair double-strand break repair via nonhomologous end joining lagging strand elongation protein ADP-ribosylation nucleic acid binding hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances NAD+ ADP-ribosyltransferase activity DNA ligase (ATP) activity adenosine ribonucleotides de novo biosynthesis Base excision repair NF-kappa B signaling pathway | details |
| TreatCFM000131 | post-embryonic root development U5 snRNA 3'-end processing exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nuclear polyadenylation-dependent mRNA catabolic process nuclear polyadenylation-dependent tRNA catabolic process U1 snRNA 3'-end processing nuclear polyadenylation-dependent rRNA catabolic process nuclear mRNA surveillance nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' U4 snRNA 3'-end processing MAPK signaling pathway - yeast AU-rich element binding protein domain specific binding cytoplasmic exosome (RNase complex) nuclear exosome (RNase complex) RNA degradation Transcription_related, Transcription factor: HB | details |
| TreatCFM000162 | cell surface receptor signaling pathway cAMP-dependent protein kinase activity protein phosphorylation Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase glycolysis I (from glucose 6-phosphate) plasma membrane polysaccharide binding | details |
| TreatCFM000208 | adenosine ribonucleotides de novo biosynthesis Golgi apparatus cell division site cell plate plant-type vacuole nuclear envelope cytokinesis by cell plate formation nucleic acid binding O-acetyltransferase activity cell wall organization or biogenesis | details |
| TreatCFM000254 | Amyotrophic lateral sclerosis (ALS) Transcription_related, Transcription regulator: SWI/SNF-SWI3 mitochondrial outer membrane translocase complex spermine and spermidine degradation III histone H3-K4 methylation protein import into mitochondrial matrix protein channel activity | details |
| TreatCFM000349 | benzoyl-CoA biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BES1 Transcription_related, Transcription regulator: LIM Ubiquitin_Proteasome_system, DUB: JAMM glycoprotein 2-beta-D-xylosyltransferase activity fatty acid β-oxidation II (peroxisome) transcription factor activity, sequence-specific DNA binding transcription regulatory region DNA binding benzoate biosynthesis I (CoA-dependent, β-oxidative) protein N-linked glycosylation formation of translation preinitiation complex regulation of transcription, DNA-templated carbohydrate transport regulation of translational initiation brassinosteroid mediated signaling pathway | details |
| TreatCFM000615 | hydrolase activity, hydrolyzing N-glycosyl compounds trans-zeatin biosynthesis damaged DNA binding nucleus response to UV-B cytokinin biosynthetic process Cul4-RING E3 ubiquitin ligase complex Ubiquitin mediated proteolysis DNA repair Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM000637 | Amyotrophic lateral sclerosis (ALS) mitochondrial outer membrane translocase complex protein import into mitochondrial matrix vacuolar transport NLS-bearing protein import into nucleus base-excision repair DNA N-glycosylase activity nucleoplasm nuclear pore Base excision repair Lysosome regulation of catalytic activity nuclear localization sequence binding protein channel activity cysteine-type endopeptidase activity protein transporter activity Endocytosis | details |
| TreatCFM000737 | endomembrane system organization xyloglucan biosynthetic process fucose biosynthetic process megagametogenesis integral component of Golgi membrane salicylic acid mediated signaling pathway Ribosome biogenesis in eukaryotes transferase activity, transferring glycosyl groups unidimensional cell growth formation of glycosidic bonds, GlycosylTransferases: GTnc rRNA processing aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) glycolysis I (from glucose 6-phosphate) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis | details |
| TreatCFM000921 | formation of glycosidic bonds, GlycosylTransferases: GTnc fucose biosynthetic process xyloglucan biosynthetic process endomembrane system organization ncRNA processing RNA phosphodiester bond hydrolysis ribonuclease activity ribosomal small subunit biogenesis megagametogenesis salicylic acid mediated signaling pathway unidimensional cell growth integral component of Golgi membrane aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis glycolysis I (from glucose 6-phosphate) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis Glutathione metabolism Glycerolipid metabolism rRNA processing | details |
| TreatCFM000988 | regulation of plant-type hypersensitive response cellular response to gravity regulation of ARF protein signal transduction response to cadmium ion ARF guanyl-nucleotide exchange factor activity threonine-type endopeptidase activity structural constituent of cytoskeleton microtubule-based process Phagosome tubulin complex positive regulation of GTPase activity Aminoacyl-tRNA biosynthesis Proteasome proteolysis involved in cellular protein catabolic process vesicle-mediated transport Endocytosis proteasome core complex GTPase activity | details |
| TreatCFM001114 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth formation of glycosidic bonds, GlycosylTransferases: GTnc aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) glycolysis I (from glucose 6-phosphate) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | details |
| TreatCFM001242 | DNA replication, synthesis of RNA primer primosome complex DNA primase activity Cell cycle 4 iron, 4 sulfur cluster binding | details |
| TreatCFM001293 | Transcription_related, Transcription regulator: LIM Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex Sphingolipid metabolism carbohydrate transport protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding ubiquitin protein ligase activity | details |
| TreatCFM001298 | 3R-hydroxyacyl-CoA dehydratase activity fatty acid beta-oxidation, unsaturated, even number Transcription_related, Transcription regulator: LIM carbohydrate transport arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) unsaturated, even numbered fatty acid β-oxidation very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Peroxisome | details |
| TreatCFM001380 | Fanconi anemia pathway Pyrimidine metabolism pollen exine formation pyrimidine nucleotide biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process nucleotide phosphorylation CMP phosphorylation pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis cytidylate kinase activity uridylate kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc adenosine ribonucleotides de novo biosynthesis pyrimidine ribonucleotides interconversion | details |
| TreatCFM001381 | vacuolar transport Arachidonic acid metabolism Fanconi anemia pathway Endocytosis | details |
| TreatCFM001410 | polyamine transmembrane transport mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP cellular metabolic process amino acid transmembrane transport L-amino acid transmembrane transporter activity polyamine transmembrane transporter activity Cell cycle | details |
| TreatCFM001504 | glycolysis I (from glucose 6-phosphate) | details |
| TreatCFM001663 | Transcription_related, Transcription regulator: LIM FAD binding plastoglobule oxidation-reduction process secondary metabolite biosynthetic process | details |
| TreatCFM001804 | Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription regulator: LIM formation of translation preinitiation complex regulation of translational initiation eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex proteasome complex eukaryotic 43S preinitiation complex proteasome-mediated ubiquitin-dependent protein catabolic process Homologous recombination Proteasome RNA transport | details |
| TreatCFM001841 | Transcription_related, Transcription regulator: LIM imidazoleglycerol-phosphate dehydratase activity L-histidine biosynthesis plant sterol biosynthesis histidine biosynthetic process anion transport FAD binding Steroid biosynthesis plastoglobule Biosynthesis of amino acids transmembrane transporter activity | details |
| TreatCFM001888 | 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity 3'-phospho-5'-adenylyl sulfate transmembrane transport Transcription_related, Transcription regulator: TRAF integral component of Golgi membrane clathrin vesicle coat integral component of endoplasmic reticulum membrane ATP-dependent peptidase activity Ubiquitin_Proteasome_system, E3 adaptor: BTB carbohydrate transport Plant hormone signal transduction vesicle-mediated transport endomembrane system | details |
| TreatCFM002029 | Transcription_related, Transcription regulator: TRAF Ubiquitin_Proteasome_system, E3 adaptor: BTB Plant hormone signal transduction Spliceosome | details |
| TreatCFM002059 | red chlorophyll catabolite reductase activity phosphomannomutase activity carbohydrate phosphatase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription regulator: LIM regulation of plant-type hypersensitive response defense response, incompatible interaction starch metabolic process protein tyrosine/serine/threonine phosphatase activity phosphate ion transport Circadian rhythm chlorophyll catabolic process chlorophyll a degradation II GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation starch degradation II UDP-glucose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II Porphyrin and chlorophyll metabolism ER to Golgi vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |