TreatCFM001801's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| positive regulation of transport | 0.004048762 | GO:0051050 |
| RNA binding | 0.007256374 | GO:0003723 |
| protein binding involved in protein folding | 0.007256374 | GO:0044183 |
| Ribosome biogenesis in eukaryotes | 0.014979899 | KEGG pathway |
| tRNA processing | 0.018197904 | GO:0008033 |
| rRNA processing | 0.027586936 | GO:0006364 |
| unfolded protein binding | 0.047600459 | GO:0051082 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008146 | AT1G47740 (4.00E-101) | PPPDE putative thiol peptidase family protein |
| CRO_T016536 | AT5G48830 (8.00E-99) | unknown protein |
| CRO_T025230 | AT5G52490 (5.00E-57) | Fibrillarin family protein |
| CRO_T026983 | AT5G54580 (2.00E-19) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T029454 | AT2G01220 (5.00E-45) | Nucleotidylyl transferase superfamily protein |
| CRO_T033134 | AT3G03960 (0) | TCP-1/cpn60 chaperonin family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000254 | Amyotrophic lateral sclerosis (ALS) Transcription_related, Transcription regulator: SWI/SNF-SWI3 mitochondrial outer membrane translocase complex spermine and spermidine degradation III histone H3-K4 methylation protein import into mitochondrial matrix protein channel activity | details |
| TreatCFM000311 | formyltetrahydrofolate deformylase activity purine nucleotide binding cyanoalanine nitrilase activity phosphoenolpyruvate carboxykinase activity hydroxymethyl-, formyl- and related transferase activity 3-cyanoalanine hydratase activity cyanide detoxification I L-asparagine degradation I Glyoxylate and dicarboxylate metabolism cyanide catabolic process embryonic pattern specification detoxification of nitrogen compound superpathway of aspartate and asparagine biosynthesis myosin heavy chain kinase activity Pwp2p-containing subcomplex of 90S preribosome gluconeogenesis 'de novo' IMP biosynthetic process Cyanoamino acid metabolism snoRNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) amino acid binding mRNA surveillance pathway Ribosome biogenesis in eukaryotes cell division Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001292 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 spermine and spermidine degradation III starch biosynthesis regulation of SNARE complex assembly lysosome organization histone H3-K4 methylation endosome organization glycogen biosynthetic process transcription from RNA polymerase III promoter vesicle docking involved in exocytosis clathrin vesicle coat HOPS complex protein binding, bridging glucose-1-phosphate adenylyltransferase activity starch biosynthetic process DNA-directed RNA polymerase III complex RNA polymerase III activity ribonucleoside binding ATP-dependent peptidase activity DNA binding Autophagy - yeast | details |
| TreatCFM001378 | protein import into nucleus, docking protein import into nucleus, translocation cellular response to nitrogen starvation ribosomal protein import into nucleus Mismatch repair clathrin vesicle coat mismatch repair complex NLS-bearing protein import into nucleus autophagy nuclear membrane nuclear periphery Transcription_related, Transcription factor: MYB Apelin signaling pathway Phenylpropanoid biosynthesis very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism Ran GTPase binding nuclear localization sequence binding mismatched DNA binding | details |
| TreatCFM001465 | proteolysis response to reactive oxygen species regulation of gene expression methylated histone binding AMPK signaling pathway Cell cycle - Caulobacter translational elongation Transcription_related, Transcription regulator: TRAF Ubiquitin_Proteasome_system, E3 adaptor: BTB ATP-dependent peptidase activity translation elongation factor activity | details |
| TreatCFM001579 | protein N-glycosylation (eukaryotic, high mannose) starch biosynthesis dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity glucose-1-phosphate adenylyltransferase activity Ubiquitin_Proteasome_system, E3 adaptor: Cullin formation of glycosidic bonds, GlycosylTransferases: GTnc spindle anaphase-promoting complex protein O-linked mannosylation glycogen biosynthetic process megagametogenesis protein N-linked glycosylation dolichol metabolic process GPI anchor biosynthetic process tRNA processing starch biosynthetic process rRNA processing protein ubiquitination involved in ubiquitin-dependent protein catabolic process | details |
| TreatCFM001602 | isoleucyl-tRNA aminoacylation isoleucine-tRNA ligase activity aminoacyl-tRNA editing activity regulation of translational fidelity Aminoacyl-tRNA biosynthesis transcription factor TFIIE complex protein transmembrane transport protein localization to organelle transcription initiation from RNA polymerase II promoter protein channel activity cytosol Basal transcription factors translational initiation Ribosome biogenesis in eukaryotes Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001888 | 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity 3'-phospho-5'-adenylyl sulfate transmembrane transport Transcription_related, Transcription regulator: TRAF integral component of Golgi membrane clathrin vesicle coat integral component of endoplasmic reticulum membrane ATP-dependent peptidase activity Ubiquitin_Proteasome_system, E3 adaptor: BTB carbohydrate transport Plant hormone signal transduction vesicle-mediated transport endomembrane system | details |
| TreatCFM001941 | transcription factor TFIIE complex Basal transcription factors transcription initiation from RNA polymerase II promoter translational initiation | details |
| TreatCFM001974 | fatty acid biosynthesis (plant mitochondria) anthocyanidin modification (Arabidopsis) ubiquitin-protein transferase activator activity anaphase-promoting complex binding Fatty acid metabolism Ubiquitin mediated proteolysis flavonoid biosynthetic process flavonoid glucuronidation regulation of catalytic activity fatty acid biosynthetic process cell division | details |
| TreatCFM002077 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase cysteinyl-tRNA aminoacylation cysteine-tRNA ligase activity peptidyl-lysine monomethylation protein-lysine N-methyltransferase activity abscisic acid-activated signaling pathway peptidyl-serine phosphorylation protein autophosphorylation calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity Aminoacyl-tRNA biosynthesis MAPK signaling pathway - plant Plant-pathogen interaction intracellular signal transduction cytoplasm | details |
Expression profiles
 Show details about module gene expression profiling |